Articles scientifiques


Accepté





Lheureux A., N. Savoye, Y. Del Amo, E. Goberville, Y. Bozec, E. Breton, P. Conan, S. L’Helguen, L. Mousseau, P. Raimbault, P. Rimelin-Maury, L. Seuront, R. Vuillemin, J. Caparros, T. Cariou, M.-A. Cordier, A.-M. Corre, L. Costes, O. Crispi, M. Crouvoisier, H. de Lary de Latour, H. Derriennic, J. Devesa, M. Durozier, S. Ferreira, N. Garcia, E. Grossteffan, A. Gueux, M. Lafont, V. Lagadec, E. Lecuyer, C. Leroux, E. Macé, E. Maria, L. Mornet, A. Nowaczyk, M. Parra, F. Petit and V. David, accepted. Bi-decadal variability in physico-biogeochemical characteristics of the temperate coastal ecosystems: from large-scale to local drivers. Marine Ecology Progress Series. https://doi.org/10.3354/meps13577





2020





Gac J.-P., P. Marrec, T. Cariou, C. Guillerm, É. Macé, M. Vernet and Y. Bozec, 2020. Cardinal Buoys: An Opportunity for the Study of Air-Sea CO2 Fluxes in Coastal Ecosystems. Frontiers in Marine Science, 7:712, doi: 10.3389/fmars.2020.00712





Gohin F., P. Bryère, A. Lefebvre, P.-G. Sauriau, N. Savoye, V. Vantrepotte, Y. Bozec, T. Cariou, P. Conan, S. Coudray, G. Courtay, S. Françoise, A. Goffart, T. Hernandez-Farinas, M. Lemoine, A. Piraud, P. Raimbault, M. Retho, 2020. Satellite and in situ monitoring of Chl-a, Turbidity, and Total Suspended Matter in coastal waters: Experience of the year 2017 along the French coasts. Journal of Marine Science and Engineering, 8, 665; doi:10.3390/jmse8090665





Liénart C., N. Savoye, P. Conan, V. David, P. Barbier, S. Bichon, K. Charlier, L. Costes, H. Derriennic, S. Ferreira, A. Gueux, C. Hubas, E. Maria, T. Meziane, accepted. Relationship between bacterial compartment and particulate organic matter (POM) in coastal systems: an assessment using fatty acids and stable isotopes. Estuarine, Coastal and Shelf Science, 239, 106720, doi.org/10.1016/j.ecss.2020.106720.





2019





Arsenieff L, Simon N, Rigaut-Jalabert
F, Gall F Le, Chaffron S, Corre E, et al. (2019). First Viruses Infecting the Marine
Diatom Guinardia delicatula. 9. doi:10.3389/fmicb.2018.03235





Carstensen J. and C. M. Duarte, 2019. Drivers of pH Variability in Coastal Ecosystems. Environmental Science & Technology 2019 53 (8), 4020-4029. DOI: 10.1021/acs.est.8b03655





Chen C-T, Bănaru D, Carlotti F, Faucheux M. and Harmelin-Vivien M., 2019. Seasonal variation in biochemical and energy content of size-fractionated zooplankton in the Bay of Marseille (NorthWestern Mediterranean Sea), publié au Journal of Marine Systems, 199, 103223. doi.org/10.1016/j.jmarsys.2019.103223.





Cocquempot L,
Delacourt C, Paillet J, Riou P, Aucan J, Ballu V, Castelle B, Charria G,
Claudet J, Conan P, Hocdé R, Planes S, Raimbault P, Savoye N, Testut L and
Vuillemin R (2019) Coastal Ocean and Nearshore Observation: A French Case
Study. Front. Mar. Sci. 6:324. doi: 10.3389/fmars.2019.00324.





Dadon-Pilosof, A., Lombard, F., Genin, A., Sutherland, K. R., and Yahel, G. (accepted). In situ sampling of salp feeding reveals size-independent, high filtration of picoeukaryotic algae. Limnology And Oceanography.





De Cubber, L., Lefebvre, S., Lancelot, T., Denis, L., Gaudron, S. M. (2019) Annelid polychaetes experience metabolic acceleration as other Lophotrochozoans: inferences on the life cycle of Arenicola marina with a Dynamic Energy Budget model. Ecological Modelling 411: https://doi.org/10.1016/j.ecolmodel.2019.108773





Richirt J., E. Goberville, V. Ruiz-Gonzalez, B Sautour, 2019. Local changes in copepod composition and diversity in two coastal systems of Western Europe. Estuarine, Coastal and Shelf Science, 227, 106304. https://doi.org/10.1016/j.ecss.2019.106304





Rombouts, I., Simon, N., Aubert, A., Cariou, T., Feunteun, E., Guérin, L., McQuatters-Gollop, A., Hoebeke, M., Rigaut-Jalabert. F., Artigas, LF., 2019. Changes in marine phytoplankton diversity: assessment under the Marine Strategy Framework Directive. Ecological indicators, 102, 265-277.





Tragin M. & Vaulot D. 2019. Novel diversity within marine M





Tragin M. & Vaulot D. 2019. Novel diversity within marine Mamiellophyceae (Chlorophyta) unveiled by metabarcoding. Scientific Reports, 9(1),5190.





Tran T., Duforêt-Gaurier L., Vantrepotte V., Schaffer Ferreira Jorge D., Mériaux X., Cauvin C., Fanton d’Andon O., Loisel  H., (2019) Deriving Particulate Organic Carbon in Coastal Waters from Remote Sensing: Inter-Comparison Exercise and Development of a Maximum Band-Ratio Approach, Remote Sensing, (11), 2849.





2018





Breitwieser M. , E. Vigneau , A.Viricel , V. Becquet ,
C. Lacroix , M. Erb , V. Huet , C.Churlaud , S. Le Floch , B. Guillot , M.
Graber , H. Thomas, 2018. What is the relationship between the bioaccumulation
of chemical contaminants in the variegated scallop Mimachlamys varia and its
health status? A study carried out on the French Atlantic coast using the Path
ComDim model. Science of the Total Environment, 640-641, pp.662-670.





Breitwieser M., Becquet V., Thomas-Guyon H., Pillet
V., Sauriau P.-G., Graber M. & Viricel A., 2018. Population structure and
genetic diversity in the variegated scallop, Mimachlamys varia (Linnaeus,
1758), a novel bioindicator of chemical pollution on the French coastline. J.
Mol. Stud., 84 (4): 417-425. https://doi.org/10.1093/mollus/eyy035





Briant N., N. Savoye, T. Chouvelon, V. David, S.
Rodriguez, K. Charlier, J. E. Sonke, J.-F. Chiffoleau, C. Brach-Papa, J.
Knoery, 2018. Carbon and nitrogen elemental and isotopic ratios of
filter-feeding bivalves along the French coasts: An assessment of specific,
geographic, seasonal and multi-decadal variations. Science of the Total
Environment, 613-614, 196-207.





Chevillot X., S
Tecchio, A. Chaalali, G. Lassalle, J. Selleslagh, G. Castelnaud, V. David, G.
Bachelet, N. Niquil, B. Sautour and J. Lobry, 2018. Global Changes Jeopardize
the Trophic Carrying Capacity and Functioning of Estuarine Ecosystems.
Ecosystems. https://doi.org/10.1007/s10021-018-0282-9





Crenn, K., D. Duffieux & C.
Jeanthon. 2018. Bacterial
epibiotic communities of ubiquitous and abundant marine diatoms are distinct in
short- and long-term associations. Front. Microbiol. 9:2879. doi:
10.3389/fmicb.2018.02879.





Cuartero M. G.
Crespo, T. Cherubini, N. Pankratova, F. Confalonieri, F. Massa, M.-L.
Tercier-Waeber, M. Abdou, J. Schäfer, and E. Bakker, 2018. In Situ Detection
of Macronutrients and Chloride in Seawater bySubmersible Electrochemical
Sensors. Analytical Chemistry, 90, 4702-4710.





Frère, L., Maignien, L., Chalopin, M., Huvet, A., Rinnert, E., Morrison, H., Kerninon, S., Cassone, A.L., Lambert, C., Reveillaud, J., Paul-Pont, I. (2018). Microplastic bacterial communities in the Bay of Brest: Influence of polymer type and size. Environmental Pollution, 242, 614-625.





Legrand
E, Riera P, Pouliquen L, Bohner O, Cariou T, Martin S., 2018. Ecological
characterization of intertidal rockpools: Seasonal and diurnal monitoring of
physico-chemical parameters Regional
Studies in Marine Science,
17, 1-10.





Liénart C., N. Savoye, V. David, P. Ramond, P.
Rodriguez Tress, V. Hanquiez, V. Marieu, F. Aubert, S. Aubin, S. Bichon, C.
Boinet, L. Bourasseau, Y. Bozec, M. Bréret, E. Breton, J. Caparros, T. Cariou,
P. Claquin, P. Conan, A.-M. Corre, L. Costes, M. Crouvoisier, Y. Del Amo, H.
Derriennic, F. Dindinaud, R. Duran, M. Durozier, J. Devesa, S. Ferreira, E.
Feunteun, N. Garcia, S. Geslin, E. Grossteffan, A. Gueux, J. Guillaudeau, G.
Guillou, O. Jolly, N. Lachaussée, M. Lafont, V. Lagadec, J. Lamoureux, B.
Lauga, B. Lebreton, E. Lecuyer, J.-P. Lehodey, C. Leroux, S. L’Helguen, E.
Macé, E. Maria, L. Mousseau, A. Nowaczyk, P. Pineau, F. Petit, M. Pujo-Pay, P.
Raimbault, P. Rimmelin-Maury, V. Rouaud, P.-G. Sauriau, E. Sultan, N.
Susperregui, 2018. Dynamics of particulate organic matter composition in
coastal systems: forcing to the spatio-temporal variability at multi-systems
scale. Progress in Oceanography, 162, 271-289.





López-Acosta M., Leynaert A., Grall J., Maldonado M.
2018. Silicon consumption kinetics by marine sponges: an assessment of their
role at the ecosystem level. Limnol.
Oceanogr. DOI:10.1002/lno.10956





López-Acosta
M., A. Leynaert, V. Coquille, M. Maldonado, 2018. Silicon
utilization by sponges: an assessment of seasonal changes. Mar. Ecol. Progr.
Ser., https://doi.org/10.3354/meps12752





Millet B, Pinazo C, Banaru D, Pagès R, Guiart P,
Pairaud I (2018) Unexpected spatial impact of treatment plant discharges
induced by episodic hydrodynamic events: Modelling Lagrangian transport of fine
particles by Northern Current intrusions in the bays of Marseille (France). PLoS
ONE 13(4): e0195257. https://doi.org/10.1371/journal.pone.0195257.





Morelle, J., M. Schapira, S. Francoise, G. Courtay, F.
Orvain, and P. Claquin. (2018) Dynamics of exopolymeric carbon pools in
relation with phytoplankton succession along the salinity gradient of a
temperate estuary (France). Estuarine Coastal And Shelf Science. 209: p. 18-29.





Morelle, J., M. Schapira, F. Orvain, P. Riou, L. P-J.,
O. Pierre-Duplessix, E. Rabiller, F. Maheux, B. Simon, and P. Claquin. (2018)
Annual phytoplankton primary production estimation in a temperate estuary by
coupling PAM and carbon incorporation methods. Estuaries and Coasts. DOI
10.1007/s12237-018-0369-8.





Rachik S, Christaki U, Li LL, Genitsaris S, Breton E, Monchy S, 2018. Diversity and potential activity patterns of planktonic eukaryotic microbes in a mesoeutrophic coastal area (eastern English Channel). PLOS ONE 13(5): e0196987. https://doi.org/10.1371/journal.pone.0196987.





Tragin M. &
Vaulot D. 2018. Green microalgae in marine coastal waters: the OSD dataset.
Sci. Rep. 8:14020.





Tragin M. &
Vaulot D. 2018. Novel diversity within Micromonas and Ostreococcus
(Mamiellophyceae) unveiled by metabarcoding analyses. Sci. Rep. 9:5190.





2017





Bordeyne
F., Davoult D., Migné A., Bertaud Du Chazaud E., Leroux C., Riera P., 2017. Trophic
structure of two intertidal Fucus spp. communities along a vertical gradient:
Similarity and seasonal stability evidenced with δ13C and δ15N.
Journal of Sea Research, 120, 50-59.





Breton Elsa, Urania Christaki, Simon Bonato, Morgane Didry, Luis Felipe Artigas. 2017. Functional trait variation and nitrogen use efficiency in temperate coastal phytoplankton. Mar Ecol Prog Ser, 563: 35–49.





Chevillot X., H. Drouineau, P. Lambert, L. Carassou, B. Sautour, J. Lobry, 2017. Toward a phenological mismatch in estuarine pelagic food web? PLoS ONE 12(3): e0173752. https://doi.org/10.1371/journal.pone.0173752





Christaki Urania, Savvas Genitsaris, Sébastien Monchy,
Luen Li, Sara Rachik, Elsa Breton, Télesphore Sime-Ngando Parasitic eukaryotes
in a meso-eutrophic coastal system with marked Phaeocystis globosa blooms. 2017. Frontiers in Marine Science. https://doi.org/10.3389/fmars.2017.00416





Dadon-Pilosof, A., Conley, K. R., Jacobi, Y., Haber, M., Lombard, F., Sutherland, K. R., et al. 2017. Surface properties of SAR11 bacteria facilitate grazing avoidance. Nature microbiology 2, 1608.





Frère, L., Paul-Pont, I., Rinnert, E., Petton, S., Jaffré, J., Bihannic, I., Soudant, P., Lambert, C., Huvet, A., 2017. Influence of environmental and anthropogenic factors on the composition, concentration and spatial distribution of microplastics: A case study of the Bay of Brest (Brittany, France). Environ. Pollut. 225, 211–222. doi:10.1016/j.envpol.2017.03.023





Gamain P., P. Gonzalez, J. Cachot, P.
Pardon, N. Tapie, P. Y. Gourves, H. Budzinski, B. Morin, 2016. Combined effects of pollutants
and salinity on embryo-larval development of the Pacific oyster, Crassostrea gigas. Marine Environmental Research 113, 31-38.





Gazeau, F., Sallon A., Maugendre L.,
Louis J., Dellisanti W., Gaubert M., Lejeune P., Gobert S., Borges A. V.,
Harlay J., Champenois W., Alliouane S., Taillandier V., Louis F., Obolensky G.,
Grisoni J. M. and Guieu C.  2017. First mesocosm experiments
to study the impacts of ocean acidification on plankton communities in the NW
Mediterranean Sea (MedSeA project). Estuarine, Coastal and Shelf Science 186,
Part A: 11-29.





Howes E. L., Eagle R., Gattuso J.-P. & Bijma J., (2017) Comparison of Mediterranean pteropod shell biometrics and ultrastructure from historical (1910 and 1921) and present day (2012) samples provides baseline for monitoring effects of global change. PLoS ONE 12:e0167891.





Kapsenberg L, Alliouane S, Gazeau F, Mousseau L,
Gattuso JP, 2017. Coastal ocean acidification and increasing total alkalinity
in the northwestern Mediterranean Sea. Ocean Science, 13(3), 411-426.





Legrand E, Riera P, Lutier M, Coudret J, Grall J,
Martin S, 2017. Species interactions can shift the response of a maerl bed
community to ocean acidification and warming. Biogeosciences, 14, 5359-5376.





Liénart C, Savoye.N, Bozec Y, Breton E, Conan P, David
V, Feunteun E, Grangeré K, Kerhervé P, Lebreton B, Lefebvre S, L’Helguen S,
Mousseau L, Raimbault P, Richard P, Riera P, Sauriau P-G, Schaal G, Aubert F,
Aubin S, Bichon S, Boinet C, Bourasseau L, Bréret M, Caparros J, Cariou T,
Charlier K, Claquin P, Cornille V, Corre A-M, Costes L, Crispi O, Crouvoisier
M, Czamanski M, Del Amo Y, Derriennic H, Dindinaud F, Durozier M, Hanquiez V,
Nowaczyk A, Devesa J, Ferreira S, Fornier M, Garcia F, Garcia N, Geslin S,
Grossteffan E, Gueux A, Guillaudeau J, Guillou G, Joly O, Lachaussée N, Lafont
M, Lamoureux J, Lecuyer E, Lehodey J-P, Lemeille D, Leroux C, Macé E, Maria E,
Pineau P, Petit F, Pujo-Pay M, Rimelin-Maury P, Sultan E., 2017. Dynamics of
particulate organic matter composition in coastal systems: a spatio-temporal
study at multi-systems scale. Progress in Oceanography, 156, 221-239 (http://dx.doi.org/10.1016/j.pocean.2017.03.001.





Louis J, Gazeau
F. and Guieu C., 2017. Atmospheric nutrients in seawater under current and high
pCO2 conditions after Saharan dust deposition: results from three minicosm
experiments, Progress in Oceanography,
http://dx.doi.org/10.1016/j.pocean.2017.10.011





Maugendre, L.,
Guieu C, Gattuso J-P. and Gazeau F. 2017, Ocean acidification in the Mediterranean
Sea: Pelagic mesocosm experiments. A synthesis. Estuarine, Coastal and Shelf
Science 186, Part A: 1-10.





Pedrotti ML, Mousseau L, Marro S, Passafiue O, Gossaert M, Labat JP (2017) variability of ultraplankton composition in an ologotrophic coastal ecosystem of the NW mediterranean Sea derived from a two-uear survey at the single cell level. PLOS One, 21 dec., 1-23 https://doi.org/10.1371/journal.pone.0190121





Thorel,
M., P. Claquin, M. Schapira, R. Le Gendre, P. Riou, D. Goux, B. Le Roy, V.
Raimbault, A.F. Deton-Cabanillas, P. Bazin, V. Kientz-Bouchart, and J. Fauchot.
(2017) Nutrient ratios influence variability in Pseudo-nitzschia species
diversity and particulate domoic acid production in the Bay of Seine (France).
Harmful Algae. 68: p. 192-205.





2016





Bonato S., Breton E., Didry M., Lizon F., Cornille V.,
Lecuyer E., Christaki U., Artigas L.F. (2016) Spatio-temporal patterns in
phytoplankton assemblages in inshore-offshore gratients using flow cytometry :
A case study in the eastern English Channel. Journal of Marine Systems,
156:76-85.





Brylinski Jean-Michel, Luen-Luen Li, Lies
Vansteenbrugge, Elvire Antajan, Stefan Hoffman, Karl Van Ginderdeuren and
Dorothée Vincent, 2016. Did the Indo-Pacific leptomedusa Lovenella assimilis (Browne, 1905) or Eucheilota menoni
Kramp, 1959 invade northern European marine waters? Morphological and genetic
approaches. Aquatic Invasions, 11: 21–32, DOI:
http://dx.doi.org/10.3391/ai.2016.11.1.03





Chevillot, X., M. Pierre, A. Rigaud, H. Drouineau, A. Chaalali, B.
Sautour, J. Lobry, 2016. Abrupt shifts in the Gironde
fish community: an indicator of ecological changes in an estuarine ecosystem. Marine
Ecology Progress Series, 549: 137–151.





Crenn, K., D. Serpin, C. Lepleux, J. Overmann & C. Jeanthon. 2016. Silicimonas algicola gen. nov., sp. nov. a novel member of the Roseobacter clade isolated from the cell surface of the marine diatom Thalassiosira delicatula. Int. J. Syst. Evol. Microbiol. 66 : 4580-4588, doi: 10.1099/ijsem.0.001394.





de Montaudouin X., M. Lucia, C. Binias, M. Lassudrie, M. Baudrimont, A. Legeay, N. Raymond, F. Jude-Lemeilleur, C. Lambert, N. Le Goïc, F. Garabetian, P. Gonzalez, H. Hegaret, P. Lassus,W. Mehdioub, L. Bourasseau, G. Daffe, I. Paul-Pont, M. Plus, V.T. Do, G. Meisterhans, N. Mesmer-Dudons, N. Caill-Milly, F. Sanchez, P. Soudant, 2016. Why is Asari (=Manila) clam Ruditapes philippinarum fitness poor in Arcachon Bay: A meta-analysis to answer? Estuarine, Coastal and Shelf Science 179, 226-235.





Delebecq G., D. Davoult, M-A. Janquin, L. V. Oppliger, D. Menu,
J-C. Dauvinand, F. Gevaert. 2016. Photosynthetic response
to light and temperature in Laminaria
digitata
gametophytes from two French populations. Eur. J. Phycol.  51: 71–82.





Delpy F., S. Albouy-Boyerc, M. Pagano, D. Thibault, J.
Blanchot, F.s Guilhaumon, J. C. Molinero, D. Bonnet, 2016. Identifying the
drivers of abundance and size of the invasive ctenophore Mnemiopsis leidyi in Northwestern Mediterranean lagoons. Estuarine,
Coastal and Shelf Science, 179, 226-235.





Derot J., Schmitt F.G., Gentilhomme V. &
Morin P. 2016. Correlation between long-term marine temperature time series from the
eastern and western English Channel: Scaling analysis using empirical mode
decomposition. Comptes
Rendus Geoscience
, 348: 343-349.  http://doi.org/10.1016/j.crte.2015.12.001





Gamain P., P. Gonzalez, J. Cachot, P. Pardon, N. Tapie, P. Y. Gourves, H.
Budzinski, B. Morin, 2016. Combined effects of
pollutants and salinity on embryo-larval development of the Pacific oyster, Crassostrea gigas. Marine
Environmental Research 113, 31-38.





Gasmi S.,
Bernard I., Pouvreau S., Maurer D., Schaal G., Ganthy F., Cominassi L., Allain
G., Sautour B., David V. (2016). Spatial patterns in the
reproductive effort of the wild Pacific oyster Crassostrea gigas in a
macrotidal coastal ecosystem: influence of tidal processes and beyond. Journal
of Sea Research, 119, 28-36. doi: 10.1016/j.seares.2016.10.008





Genitsaris S, Monchy S, Breton E, Lecuyer E, Christaki
U (2016) Small-scale variability of protistan planktonic communities relative
to environmental pressures and biotic interactions at two adjacent coastal
stations. Marine Ecology Progress Series, 548:61-75.





Genitsaris S., S. Monchy, J. Denonfoux, S. Ferreira,
K.A. Kormas, T. Sime-Ngando, E. Viscogliosi, Urania Christaki. 2016. Marine
microbial community structure assessed from combined metagenomic analysis and
ribosomal tag pyrosequencing. Marine Biology Research 12(1):30-42





Howes EL, Stemmann L, Assailly C, Irisson JO, Dima M,
Bijma J, Gattuso JP (2016) Pteropod time series from the North Western Mediterranean
(1967−2003): impacts of pH and climate variability. Marine Ecology Progress
Series Vol. 531: 193–206, 2015 doi: 10.3354/meps11322.





López-Acosta,
M., Leynaert, A. and Maldonado, M., 2016, Silicon consumption in two
shallow-water sponges with contrasting biological features. Limnology
and Oceanography 61(6), 2139-2150.





Meisterhans G., N. Raymond, E. Girault, C. Lambert, L. Bourrasseau, X. de
Montaudouin, F. Garabetian, F. Jude-Lemeilleur, 2016. Structure of Manila Clam (Ruditapes
philippinarum
) Microbiota at the Organ Scale in Contrasting Sets of
Individuals. Microb Ecol, 71:194–206.





Murphy J.T., M. Voisin, M.
Johnson, F. Viard, 2016. Abundance and recruitment data for Undaria pinnatifida in Brest harbour,
France: Model versusfield results. Data in Brief, 7, 540-545.





Murphy J.T., M. Johnson, F. Viard, 2016. A theoretical examination of environmental effects on the life cycle schedule and range limits of the invasive seaweed Undaria pinnatifida. Biological Invasions, 19, 691-702.





Romagnan JB, Aldamman L, Gasparini S, Nival P, Aubert A, Jamet JL, Stemmann L (2016) High frequency mesozooplankton monitoring: Can imaging systems and automated sample analysis help us describe and interpret changes in zooplankton community composition and size structure – An example from a coastal site. Mar. Syst, http://dx.doi.org/10.1016/j.jmarsys.2016.03.013





Salt, L.A., Beaumont, L., Blain, S., Bucciarelli, E.,
Grossteffan, E., Guillot, A., L’Helguen, S., Merlivat, L., Répécaud, M., Quéméner,
L., Rimmelin-Maury, P., Tréguer, P., Bozec, Y., 2016. The annual and seasonal
variability of the carbonate system in the Bay of Brest (Northwest Atlantic
Shelf, 2008–2014), Marine Chemistry, 187: 1-15. doi:10.1016/j.marchem.2016.09.003.





Talarmin,
A., Lomas M. W., Bozec Y., Savoye N., Frigstad H., Karl D. M., and Martiny A.
C., 2016., Seasonal and long-term changes in elemental concentrations and
ratios of marine particulate organic matter. Global Biogeochem. Cycles, 30,
doi:10.1002/2016GB005409.





2015





Baudoux A.C., Lebredonchel H., Dehmer H.,
Latimier M., Edern R., Rigaut-Jalabert F., Ge P., Guillou L., Foulon E., Bozec
Y., Cariou T., Desdevises Y., Derelle E., Grimsley N., Moreau H. & Simon N. 2015. Interplay
between the genetic clades of Micromonas and their viruses in the
Western English Channel. Environmental Microbiology Reports, 7: 765-773.





Beaugrand G, Conversi A, Chiba S, Edwards M,
Fonda-Umani S, Greene C, Mantua N, Otto SA, Reid PC, Stachura MM, Stemmann L,
Sugisaki H (2015) Synchronous marine pelagic regime shifts in the Northern
Hemisphere. Phil Trans Roy Soc Lond B Biol Sci 370 | doi:
10.1098/rstb.2013.0272.





Benazza A, Selleslagh J, Breton E, Rabhi K, Cornille
V, Bacha M., Lecuyer E., Amara R. (2015). Environmental Control on Fish and
Macrocrustacean Spring Community-Structure, on an Intertidal Sandy Beach. PLoS
ONE, 10(1) : e0117220.





Bœuf, D., S. Audic, L. Brillet-Guéguen, C. Caron & C. Jeanthon. 2015. MicRhoDE: a curated database for the analysis of microbial rhodopsin diversity and evolution. Database doi: 10.1093/database/bav080.





Bonato S., Christaki U., Lefebvre A., Lizon F., Thyssen M., Artigas L. F. (2015) High spatial variability of phytoplankton assessed by flow cytometry,in a dynamic productive coastal area, in spring : The eastern English Channel. Estuarine, Coastal and Shelf Science, 154 : 214-223.





Derot, J., Schmitt F. G., Gentilhomme V. Zongo-Brizard
S., 2015. Long-term high frequency phytoplankton dyanmics, recorded from a
coastal water autonomous measurement system in the eastern English Channel,
Continental Shelf Research, 109, 210-221,. [doi:10.1016/j.csr.2015.09.015]





Genitsaris S., S. Monchy, E. Viscogliosi, T.
Sime-Ngando, S. Ferreira, U. Christaki 2015. Seasonal variations of marine
protist community structure based on taxon-specific traits using the eastern
English Channel as a model coastal system. FEMS Microbiology Ecology 91(5).





Houliez
E, Lizon F, Lefebvre S, Artigas LF & Schmitt F,2015. Phytoplankton
photosynthetic activity dynamics in a macrotidal ecosystem (the Straight of
Dover, eastern English Channel): time scales of variability and environmental
control. Journal of marine Systems, 147, 61-75.





Kopf, A., M. Bicak, R. Kottmann, J. Schnetzer, I. Kostadinov, K. Lehmann, A. Fernandez-Guerra, C. Jeanthon et al. 2015. The Ocean Sampling Day consortium. GigaScience 4 : 27.





Kopp D., Lefebvre S., Cachera M., Villanueva M.C., Ernande B., 2015. Reorganization of a marine trophic network along an inshore-offshore gradient due to stronger pelagic-benthic coupling in coastal areas. Progress in Oceanography, 130: 157-171.





Labry Claire, Delmas Daniel, Youenou Agnes, Quere
Julien, Leynaert Aude, Fraisse Stephane, Raimonet Melanie, Ragueneau Olivier
(2016). High alkaline phosphatase activity in phosphate replete waters: The case
of two macrotidal estuaries. Limnology And Oceanography , 61(4), 1513-1529.





Louis J, Bressac M., Pedrotti ML.  and Guieu C., 2015 Dissolved inorganic nitrogen and phosphorus dynamics in abiotic seawater following an artificial Saharan dust deposition, Frontiers in Marine Sciences, doi: 10.3389/fmars.2015.00027.





Marrec P., T. Cariou, E. Macé, P. Morin, L. A. Salt, M. Vernet, B. Taylor, K. Paxman and Y. Bozec, 2015. Dynamics of air-sea CO2 fluxes in the northwestern European shelf based on voluntary observing ship and satellite observations. Biogeosciences, 12 (18), 5371-5391. doi: 10.5194/bg-12-5371-2015.





Parravicini V, Mangialajo L, Mousseau L, Peirano A,
Morri C, Montefalcone M, Francour P, Kulbicki M, Bianchi C N (2015) Climate
change and warm-water species at the north-western boundary of the
Mediterranean Sea. Marine Ecology, doi: 10.1111/maec.12277





Raybaud
V., Beaugrand G., Dewarumez J.M., Luczak C. (2015) Climate-induced range shifts
of the American jackknife clam Ensis
directus
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Romagnan, J.-B., Legendre, L., Guidi, L., Jamet,
J.-L., Jamet, D., Mousseau, L., Pedrotti, M.-L., Picheral, M., Gorsky, G.,
Sardet, C., Stemmann, L., 2015. Comprehensive Model of Annual Plankton
Succession Based on the Whole-Plankton Time Series Approach. Plos One 10(3),e0119219.
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Romagnan, JB (2015): Biological time series data
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Romagnan, JB (2015): Environmental time series data
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Selleslagh, J., Blanchet, H.,
Bachelet, G. & Lobry, J., 2015. Feeding habitats connectivity
and origin of organic matter supporting fish populations in estuary with low
intertidal area: a stable isotope approach. Estuaries and Coasts, 38(5),
1431-1447.





Suroy M.,
Panagiotopoulos C, Boutorh J.,Goutx M., Moriceau B., 2015. Degradation of diatom
carbohydrates: A case study with N- and Si- stressed Thalassiosira weissflogii. J. Exp. Mar. Biol. Ecol., 470, 1-11





2014





Antajan
E, Bastian T, Raud T, Brylinski J M, Hoffman S, Breton G, Cornille V,
Delegrange A, Vincent D (2014) The invasive ctenophore Mnemiopsis leidyi A.
Agassiz, 1865 along the English Channel and the North Sea French coasts:
another introduction pathway in northern European waters ? Aquatic Invasions,
9 (2):167-173





Auger
P, Ulses C, Estournel C, Stemmann L, Somot S, Diaz F (2014) Interannual control
of plankton communities by deep winter mixing and prey/predator interactions in
the NW Mediterranean: Results from a 30-year 3D modeling study. Prog Oceanogr 124: 12-27 | doi:
10.1016/j.pocean.2014.04.004.





Banaru D., Carlotti F.,
Barani A., Gregori G., Neffati N., Harmelin-vivien M., 2013. Seasonal variation of stable isotope ratios of size-fractionated
zooplankton in the Bay of Marseille (NW Mediterranean Sea). J. Plankton Res.,
36 (1), 145-156.





Beaugrand,
G., Goberville, E., Luczak, C., Kirby, R.R. (2014). Marine biological shifts
and climate. Proceedings of the Royal Society B, 281(1783) : 20133350





Christaki
U, Kormas KA, Genitsaris S, Georges C, Sime-Ngando T, Viscogliosi E, Monchy S
(2014) Winter-summer succession of unicellular eukaryotes in a meso-eutrophic
coastal system. Microbial
Ecology,
67(1)
:13–23.





Dubois S., H. Blanchet, A. Garcia,
M. Massé, R. Galois, A. Grémare, K. Charlier, G. Guillou, P. Richard, N.
Savoye, 2014. Trophic resource use by macrozoobenthic primary
consumers within a semienclosed coastal ecosystem: stable isotope and fatty
acid assessment. Journal of Sea Research, 88, 87-99.





Fraysse M., I.L. Pairaud, O.N. Ross, V. Faure, C. Pinazo, 2014.
Intrusion of Rhone River diluted water into the Bay of Marseille: generation
processes and impacts on ecosystem functioning. J. Geophys. Res. Oceans, 119,
doi:10.1002/2014JC010022





Humily, F., Farrant, G.K., Marie, D., Partensky, F., Mazard, S.,
Perennou, M., Labadie, K., Aury, J.M., Wincker, P., Nicolas Segui, A., Scanlan,
D. J. and Garczarek, L.(2014). Development of a targeted metagenomic approach
to study a genomic region involved in light harvesting in marine Synechococcus.
FEMS
Microbial Ecology DOI: 10.1111/1574-6941.12285.





Marie, D.,
Rigaut-Jalabert, F., Vaulot, D. 2014. An improved
protocol for flow cytometry analysis of phytoplankton cultures and natural
samples. Cytometry 85: 962-968.





Marrec P., T. Cariou, M. Latimier, E. Macé, P. Morin, M. Vernet, Y.
Bozec., 2014. Spatio-temporal dynamics of biogeochemical processes and air-sea
CO2 fluxes in the Western English Channel based on two years of FerryBox
deployment. J. Mar. Syst., 140(PA), pp. 26-38





Napoléon, C., Fiant, L., Raimbault,
V., Riou, P., Claquin P. (2014). Diversity structure of
phytoplankton communities and primary productivity in a temperate
epicontinental sea . Marine Ecology Progress Series. Volume 505, 49-64





Pérez-López
P., E. Ternon, S. González-García, G. Genta-Jouve, G. Feijoo, O. P. Thomas, M. T.
Moreira, 2014. Environmental solutions for the sustainable production of
bioactivenatural products from the marine sponge Crambe crambe. Science of the Total Environment, 475, 71-82.





Perrot T. , N. Rossi, A. Ménesguen, F. Dumas, 2014. Modelling green
macroalgal blooms on the coasts of Brittany, France to enhance water quality
management. J. Mar. Syst.,132, 38-53.





Schalkhausser B., C. Bock, H.O. Pörtner, G. Lannig. 2014. Escape
performance of temperate king scallop, Pecten maximus under ocean
warming and acidification. Mar. Biol., vol 161, issue 12, 2819-2829, 2014.





Thyssen
M, Gregori G, Grisoni J-M, Pedrotti M-L, Mousseau L, Artigas L, Marro S, Garcia
N, Passafiume O, Denis M (2014) Onset of the spring bloom in the northwestern
Mediterranean Sea: influence of environmental pulse events on the in situ
hourly-scale dynamics of the phytoplankton community structure. Front. Microbiol 5 | doi:
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Tréguer P., Goberville E., Barrier
N., L’Helguen S., Morin P., Bozec Y., Rimmelin-Maury P., Czamanski M.,
Grossteffan E., Cariou T., Répécaud M., Quéméner L., 2014. Large
and local-scale influences on physical and chemical characteristics of coastal
waters of Western Europe during winter. Journal of Marine Systems, 139: 79–90.





2013





Chaalali
A., Beaugrand G., Boët P., Sautour B., 2013. Climate-Caused Abrupt Shifts in a
European Macrotidal Estuary. Estuaries and Coasts, 36 (6), 1193-1205.





Chaalali
A., Beaugrand G., Raybaud V., Goberville E., David V. Boët P., Sautour B.,
2013. Climatic facilitation o 1 f the colonization of an estuary by Acartia
tonsa. PlosOne, 8 (9), e74531.





Chaalali,
A., Chevillot, X., Beaugrand, G., David, V., Luczak, C., Boët, P., Sottolichio,
A., Sautour, B., 2013. Changes in the distribution of copepods in the Gironde
estuary: A warming and marinisation consequence? Estuarine Coastal and Shelf
Science, 134, p150-161.





De
Carlo EH, Mousseau L, Passafiume O, Drupp PS, Gattuso J-P (2013) Carbonate
Chemistry and Air-Sea CO2 Flux in a NW Mediterranean Bay Over a Four-Year
Period: 2007-2011. Aquat Geochem 19: 399-442 | doi: 10.1007/s10498-013-9217-4.





Fraysse M., Pinazo C., Faure V.M., Fuchs R., Lazzari P., Raimbault P.,
Pairaud I., 2013. Development of a 3D Coupled Physical-Biogeochemical Model for
the Marseille Coastal Area (NW Mediterranean Sea): What Complexity Is Required
in the Coastal Zone? PLOS, Volume 8 (12).





Guilloux, L.,
Rigaut-Jalabert, F., Jouenne, F., Ristori, S., Viprey, M., Not, F., Vaulot, D.,
Simon, N., 2013. An annotated checklist of Marine
Phytoplankton taxa at the SOMLIT-Astan time series off Roscoff (Western English
Channel, France): data collected from 2000 to 2010. 2013. Cah.Biol. Mar.,
54, 2, pp 247-256.





Houliez
E., F. Lizon, L.F. Artigas, S. Lefebvre, F.G. Schmitt (2013) Spatio-temporal
variability of phytoplankton photosynthetic activity in a macrotidal ecosystem
(the Strait of Dover, eastern English Channel). Estuarine, Coastal and Shelf
Science, 129, 37-48.





Houliez
E., F. Lizon, L.F. Artigas, S. Lefebvre, F.G. Schmitt (2013) Short-term
variability and control of phytoplankton photosynthetic activity in a
macrotidal ecosystem (the Straight of Dover, eastern English Channel). Marine
Biology, 160, 1661-1679.





Hugoni,
M., Taib, N., Debroas, D., Domaizon , I., Jouan Dufournel, I., Bronner, G.,
Salter, I., Agogué, H., Mary, I., Galand, P. (2013). Structure of the rare archaeal biosphere and seasonal dynamics
of active ecotypes in surface coastal waters. PNAS, Vol. 110 (15), 6004-6009.





Kegel,
J.U., del Amo, Y., Costes, L., Medlin, L.K. (2013). Testing a Microarray to
Detect and Monitor Toxic Microalgae in Arcachon Bay in France. Microarrays, 2, 1-23.





Le Pape, O., J. Modéran, G.
Beaunée, P. Riera, D. Nicolas, N. Savoye, M. Harmelin-Vivien, A. Darnaude, A.
Brind’Amour, H. Le Bris, H. Cabral, C. Vinagre, S. Pasquaud, S. França, C.
Kostecki., (2013). Sources of organic matter for flatfish juveniles in coastal
and estuarine nursery grounds: a meta-analysis for the common sole (Solea
solea) in contrasted systems of Western Europe. Journal of Sea Research, 75,
85-95.





Leclerc
J.-C., Riera P., Leroux C., Lévêque L., Davoult D., 2013. Temporal variation in
organic matter supply in kelp forests: linking structure to trophic
functioning. Marine Ecology Progress
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Marrec P., T. Cariou, E. Collin, A. Durand, M. Latimier, E. Macé, P.
Morin, S. Raimund, M. Vernet, Y. Bozec., 2013. Seasonal and latitudinal variability of the CO2 system in the western
English Channel based on Voluntary Observing Ship (VOS) measurements.
Marine Chemistry, 155, 29-41.





Napoléon,
C., Raimbault, V., Fiant, L., Claquin P. (2013). Study of dynamics of
phytoplankton and photosynthetic parameters using opportunity ships in the
western English Channel. Journal of Marine Systems. 128, 146-158.





Napoléon,
C., V. Raimbault, Claquin, P. (2013). Influence of nutrient stress on the
relationships between PAM measurements and carbon incorporation in four
phytoplankton species . PloS ONE. 8(6): e66423.
doi:10.1371/journal.pone.0066423





Noisette
F., Duong G., Six C., Davoult D., and Martin S., 2013. Effects of elevated pCO2  on the metabolism of a temperate Rhodolith
Lithothamnion Corallioides grown under different temperatures, Journal of
Phycology, 49 : 746–757.





Noisette, F.,
Egilsdottir H., Davoult , D., Marton, S., 2013. Physiological
responses of three temperate coralline algae from contrasting habitats to
near-future ocean acidification. JEMBE 448 (2013) 179-187.





Royer
C., Thébault J., Chauvaud L., Olivier F., 2013. Structural analysis and
paleoenvironmental potential of dog cockle shells (Glycymeris glycymeris) in
Brittany, northwest France, Palaeogeography, Palaeoclimatology, Palaeoecology,
373: 123–132,.





Raimonet M., Andrieux Loyer F.,
Ragueneau O., Michaud E., Kerouel R., Philippon X., Nonent M., Memery L., 2013.
Strong gradient of benthic biogeochemical
processes along a macrotidal temperate estuary: focus on P and Si cycles. Biogeochemistry, 115,
Issue 1-3, 399-417 (http://dx.doi.org/10.1007/s10533-013-9843-3)





Raybaud V., G. Beaugrand, E. Goberville, G. Delebecq, C. Destombe, M.
Valero, D. Davoult, P. Morin, F. Gevaert. 2013. Decline in Kelp in West Europe
and Climate. PLoS ONE 8(6).





Tagliarolo
M., Clavier J., Chauvaud L., Grall J., 2013. Carbon emission associated with
respiration and calcification from nine gastropod species from the intertidal
rocky shore of Western Europe. Marine Biology, 160 (11): 2891-2901.





Tagliarolo M.,
Grall J., Chauvaud L., Clavier J.,
2013. Aerial and underwater metabolism of Patella
vulgata
L.: Comparison of three intertidal levels. Hydrobiologia, 702 (1):
241-253.





Thébault
J., Chauvaud L. 2013. Li/Ca enrichments in great scallop shells (Pecten maximus) and their relationship
with phytoplankton blooms. Palaeogeography, Palaeoclimatology, Palaeoecology,
373: 108-122, [doi:10.1016/j.palaeo.2011.12.014].





Weinbauer
MG, Liu J, Motegi C, Maier C, Pedrotti ML, Dai M, Guattuso JP (2013) Seasonal
variability of microbial respiration and bacterial and archaeal community
composition in the upper twilight zone. 
Aquatic Microbial Ecology 71(2):99-115 DOI: 10.3354/ame01666





2012





Berline
L, Siokou-Frangou L, Marasovic I, Vidjak O, Luz Fernandez de Puelles M,
Mazzocchi MG, Assimakopoulou G, Zervoudaki S, Fonda-Umani S, Conversi A,
Garcia-Comas C, Ibanez F, Gasparini S, Stemmann L, Gorsky G (2012)
Intercomparison of six Mediterranean zooplankton time series. Prog Oceanogr 97:
76-91 | doi: 10.1016/j.pocean.2011.11.011.





Blanchet-Aurigny A, Dubois SF, Hily C, Rochette S, Le
Goaster E, Guillou M., 2012. Multi-decadal changes in two co-occurring
ophiuroid populations. Marine Ecology Progress Series, 460:79-90.





Canton,
M., P. Anschutz, D. Poirier, R. Chassagne, J. Deborde and N. Savoye, 2012. The
buffering capacity of a small estuary on nutrient fluxes originating from its
catchment (Leyre estuary, SW France). Estuarine, Coastal and Shelf Science, 99,
171-181.





Cresson P., Ruitton S., Fontaine M.F., Harmelin-Vivien M., 2012
Spatio-temporal variation of suspended and sedimentary organic matter quality
in the Bay of Marseilles (NW Mediterranean) assessed by biochemical and
isotopic analyses. Marine Pollution Bulletin





Dubois, S., Savoye, N., Grémare,
A., Plus, M., Charlier, K., Beltoise, A., Blanchet, H., 2012. Origin
and composition of sediment organic matter in a coastal semi-enclosed
ecosystem: An elemental and isotopic study at the ecosystem space scale.
Journal of Marine Systems, 94, 64–73.





Kegel,
J.U., del Amo, Y., Medlin, L.K. (2012). Introduction to project MIDTAL: its
methods and samples from Arcachon Bay, France. Environ Sci Pollut Res (DOI 10.1007/s11356-012-1299-9)





Kostecki, C., Roussel,
JM, Desroy, N, Roussel, G., Lanshere, J., Le Bris, H., Le Pape, O., 2012. Trophic ecology of juvenile flatfish in a coastal nursery ground:
contributions of intertidal primary production and freshwater particulate
organic matter. Marine Ecology Progress Series, 449, 221-232.





Laghdass,
M., Catala, P., Caparros, J., Oriol, L., Lebaron, P., Obernosterer, I (2012). High Contribution of SAR11 to
Microbial Activity in the North West Mediterranean Sea. Microbial Ecology, Vol.
63 (2), 324-333





Lejart
M., Clavier J., Chauvaud L., Hily C. 2012. Respiration
and Calcification of Crassostrea gigas: Contribution of an Intertidal Invasive
Species to Coastal Ecosystem CO2 Fluxes. Estuaries and Coasts, 35:622–632.





Leroy, F., Riera, P., Jeanthon, C., Edmond, F., Leroux, C., Comtet, T.,
2012. Importance of bacterivory and preferential selection toward diatoms in
larvae of Crepidula fornicata (L.) assessed by a dual stable isotope
(13C, 15N) labeling approach. J. Sea Res. 70, 23-31





Licandro
P, Souissi S, Ibanez F, Carré C (2012) Long-term variability and environmental
preferences of calycophoran siphonophores in the Bay of Villefranche
(north-western Mediterranean). Prog Oceanogr 97–100 | doi:
http://dx.doi.org/10.1016/j.pocean.2011.11.004.





Moison
M., Schmitt F.G., Souissi S., 2012. Temperature effect on Temora ongicornis swimming behaviour: illustration of seasonal
impact in temperate ecosystem, Aquatic Biology, 16, 149-162.





Monchy
S, Grattepanche JD, Breton E, Meloni D, Sanciu G, Chabé C, Delhaes L,
Viscogliosi E, Sime-Ngando T, Christaki U (2012) Microplanktonic Community
Structure in a Coastal System Relative to a Phaeocystis Bloom Inferred from
Morphological and Tag Pyrosequencing Methods. Plos One 7(6): e39924.
doi:10.1371/journal.pone.0039924.





Napoléon, C. & Claquin, P.
(2012). Multi-parametric relationships between PAM
measurements and carbon incorporation, an in situ approach. PloS ONE, 7(7), e40284 .





Napoléon, C., Raimbault, V., Fiant,
L., Riou, P., Lefebvre, S., Lampert, L., Claquin P. (2012). Spatiotemporal
dynamics of physicochemical and photosynthetic parameters in the central
English Channel. Journal of Sea Research, 69(43-52).





Pasquaud,
S., Béguer, M., Larsen, M.H., Chaalali, A., Cabral, H. & Lobry, J., 2012. Increase
of marine juvenile fish abundances in the middle Gironde estuary related to
warmer and more saline waters, due to global changes. Estuarine, Coastal and
Shelf Science 104–105: 46-53.





Philippart, C.J.M., Amaral, A., Asmus, R., van Bleijswijk, J., Bremner,
J., Buchholz, F., Cabanellas- Reboredo, M., Catarino, D., Cattrijsse, A.,
Charles, F., Comtet, T., Cunha, A., Deudero, S., Duchêne, J.-C., Fraschetti,
S., Gentil, F., Gittenberger, A., Guizien, K., Gonçalves, J.M., Guarnieri, G.,
Hendriks, I.E., Hussel, B., Pinheiro Vieira, R., Reijnen, B.T., Sampaio, I.,
Serrao, E., Sousa Pinto, I., Thiebaut, E., Viard, F., Zuur, A.F., 2012. Spatial
synchronies in the seasonal occurrence of larvae of oysters (Crassostrea
gigas
) and mussels (Mytilus edulis/galloprovincialis) in
European coastal waters. Est. Coast. Shelf Sci., 108, pp. 52-63.





Savoye,
N., V. David, F. Morisseau, H. Etcheber, G. Abril, I. Billy, K. Charlier, G.
Oggian, H. Derriennic and B. Sautour, 2012. Origin and composition of
particulate organic matter in a macrotidal estuary: the Gironde Estuary,
France. Estuarine, Coastal and Shelf Science, 108, 16-28.





Selleslagh
J., Lobry J., N’Zigou A-R, Bachelet G, Blanchet H., Chaalali A., Sautour B.,
Boët P., 2012. Seasonal succession of estuarine fish, shrimps, macrozoobenthos
and plankton: Physico-chemical and trophic influence. The Gironde estuary as a
case study. Estuarine, Coastal and Shelf Science, 112 243-254.





Tagliarolo
M., Clavier J., Chauvaud L., Koken M. Grall J., 2012. Metabolism in blue
mussel: intertidal and subtidal beds compared. Aquat. Biol., 17 (2): 167-180.





Tedetti, M., Longhitano,R. Garcia N., Guigue, C., Ferretto N., Goutx M.,
2012. Fluorescence properties of dissolved organic matter in coastal
Mediterranean waters influenced by a municipal sewage effluent (Bay of
Marseilles, France). Environ. Chem., 9, 438–449.





Tortajada S., Niquil N., Blanchet,
H., Grami, B., Montanié, H., David, V., Glé, C., Saint-Béat, B., Johnson, G.A.,
Marquis, E., del Amo, Y., Dubois, S., Vincent, D., Dupuy C., Jude, F.,
Hartmann, H.J., Sautour, B. (2012). Network analysis of the
planktonic food web during the spring bloom in a semi enclosed lagoon
(Arcachon, SW France). Acta Oecologica 40, 40-50.





Vandromme
P, Stemmann L, Garcia Comas C, Berline L, Sun X, Gorsky G (2012) Assessing
biases in computing size spectra of automatically classified zooplankton from
imaging systems: A case study with the ZooScan integrated system. Method
Oceanogr 1: 3-21 | doi: 10.1016/j.mio.2012.06.001.





Zhao L., Denis M., Barani A., Beker B., Mante C., Xao T. and Grégori G.
(2012). Possible bloom of free trichomes in the Bay of Marseille, NW
Mediterranean Sea: an anomaly evidenced by flow cytometry. J. Plankton Res. 34
(8): 711-718.





2011





Bertoni,
R., Jeffrey, W.H., Pujo-Pay, M., Oriol, L., Conan, P., Joux, F (2011). Influence of water mixing on
the inhibitory effect of UV radiation on primary and bacterial production in
Mediterranean coastal water. Aquatic Sciences, Vol. 23 (3), 377-387.





Bozec
Y., Merlivat L., Baudoux A.-C., Beaumont L., Blain S., Bucciarelli E., Danguy
T., Grossteffan E., Guillot A., Guillou J., Répécaud M., Tréguer P., 2011. Diurnal
to inter-annual dynamics of pCO2 recorded by a CARIOCA sensor in a temperate
coastal ecosystem (2003-2009). Marine
Chemistry, 126: 13-26.





Chauvaud L., Thébault J., Clavier J., Lorrain A.,
Strand Ø., 2011. What’s hiding
behind ontogenetic δ13C
variations in mollusk shells? New insights from the great scallop (Pecten
maximus). Estuaries and Coasts 34(2): 211-220, [doi:10.1007/s12237-010-9267-4].





Christaki,
U., Courties, C., Massana, R., Catala, P., Lebaron, P., Gasol, JM., Zubkov, MV (2011). Optimised routine flow
cytometric enumeration of heterotrophic flagellates using SYBR Green I.
Limnology and Oceanography Methods, Vol. 9, 329-339.





Cohu
S, Thibaut T, Mangialajo L, Labat J-P, Passafiume O, Blanfune A, Simon N,
Cottalorda J-M, Lemée R (2011) Occurrence of the toxic dinoflagellate
Ostreopsis cf. ovata in relation with environmental factors in Monaco (NW
Mediterranean). Mar Pollut Bull 62: 2681-2691 |
doi:10.1016/j.marpolbul.2011.09.022.





Durrieu
de Madron X, Guieu C, Sempéré R, Conan P, Cossa D, D’Ortenzio F, Estournel C,
Gazeau F, Rabouille S, Stemmann L, Bonnet S, Diaz V, Koubbi P, Radakovitch O,
Babin M, Baklouti M, Bancon-montigny C, Belviso S, Bensoussan N, Bonsang B,
Bouloubassi I, Brunet C, Cadiou JF, Carlotti F, Chami M, Charmasson S, Charriere
B, Dachs J, Doxaran D, Dutay JC, Elbaz-poulichet F, Eléaume M, Eyrolles F,
Fernandez C, Fowler SW, Francour P, Gaertner JC, Galzin R, Gasparini S,
Ghiglione JF, Gonzalez JL, Goyet C, Guidi L, Guizien K, Heimbuerger L-E,
Jacquet SHM, Jeffrey WH, Joux F, Le hir P, Leblanc K, Lefèvre D, Lejeusne C,
Lemée R, Loÿe-Pilot MD, Mallet M, Mejanelle L, Mélin F, Mellon C, Merigot B,
Merle PL, Migon C, Miller WL, Mortier L, Mostajir B, Mousseau L, Moutin T, Para
J, Perez T, Petrenko A, Poggiale JC, Prieur L, Pujo-Pay M, Pulido V, Raimbault
P, Rees AP, Ridame C, Rontani J-F, Pino DR, Sicre M-A, Taillandier V, Tamburini
C, Tanaka T, Taupier-Letage I, Tedetti M, Testor P, Thébault H, Thouvenin B,
Touratier F, Tronczynski J, Ulses C, Van Wambeke F, Vantrepotte V, Vaz S, Verney
R, MerMex G (2011) Marine ecosystems’ responses to climatic and anthropogenic
forcings in the Mediterranean. Prog Oceanogr 91: 97-166 |
doi:10.1016/j.pocean.2011.02.003.





Garcia-Comas
C, Stemmann L, Ibanez F, Berline L, Mazzocchi MG, Gasparini S, Picheral M,
Gorsky G (2011) Zooplankton long-term changes in the NW Mediterranean Sea:
Decadal periodicity forced by winter hydrographic conditions related to
large-scale atmospheric changes? J Marine Syst 87: 216-226 | doi:
10.1016/j.jmarsys.2011.04.003.





Gattuso
J-P, Mousseau L, Passafiume O, Comeau S (2011) Seawater carbonate chemistry in
the Bay of Villefranche, Point B (France), January 2007 – October 2011;
doi:10.1594/PANGAEA.727120





Goberville, E., Beaugrand, G.,
Sautour, B., Tréguer, P., 2011. Early evaluation of coastal
nutrient overenrichment: new procedures and indicators. Marine Pollution Bulletin 62,
1751-1761, doi:10.1016/j.marpolbul.2011.05.024





Goberville, E., Beaugrand, G.,
Sautour, B., Tréguer, P., 2011. Evaluation of coastal
perturbations: A new mathematical procedure to detect changes in the reference
state of coastal systems. Ecological Indicators 11, 1290–1300.





Grattepanche,
J.-D., Breton E., Brylinski J.-M. and Christaki U., 2011. Interactions between
of primary producers and grazers in a coastal ecosystem dominated by
Phaeocystis globosa blooms. J. Plankton Res., 33, 37—50.





Grattepanche,
J.-D., Vincent, D., Breton, E. and Christaki. U. 2011. Microzooplankton
herbivory during the diatom-Phaeocystis spring succession in the eastern
English Channel. J. Exp. Mar Biol. Ecol.404, 87-97.





Klein C., Claquin P., Pannard A.,
Napoléon C., Le Roy B., and Véron B. (2011). Dynamics of
soluble Extracellular Polymeric Substances (S-EPS) and of Transparent
Exopolymer Particles (TEP) pools in coastal ecosystems. Marine Ecology
Progress Series
, 427, 13–27





Raybaud
V, Héroin D, Raud T, Brylinski JM, Stemmann L, Thibault-Botha D, Sautour B
(2011) Census and analysis of zooplankton metadata of the French coasts since
1955. Jord 4: 11-37.





Rodriquez-Blanco, A., Antoine, V.,
Pelletier, E., Delille, D., Ghiglione, JF (2011). Effects of temperature and fertilisation on total vs,
active bacterial communities exposed to crude and diesel oil pollution in the
NW Mediterranean Sea. Environmental Pollution, Vol. 159 (1), 348-350.





Salter,
I., Bottjer, D., Christaki, U (2011). The
effect of inorganic particle concentration on bacteriavirus-nanoflagellate
dynamics. Environmental Microbiology, Vol. 13 (10) 2768-2777.





Talarmin, A., Van Wambeke, F.,
Duhamel, S., Catala, P., Moutin, T., Lebaron, P (2011). Improved methodology to measure taxon-specific
phosphate uptake in live and unfiltered samples. Limnology and Oceanography
Methods, Vol 9, 443-453.





Vandromme
P, Stemmann L, Berline L, Gasparini S, Mousseau L, Prejger F, Passafiume O,
Guarini JM, Gorsky G (2011) Inter-annual fluctuations of zooplankton
communities in the Bay of Villefranchesur- mer from 1995 to 2005 (Northern
Ligurian Sea, France). Biogeosciences 8: 3143-3158 |
doi:10.5194/bg-8-3143-2011.





Thomas, F., Cosse, A., Goulitquer, S., Raimund, S., Morin, P., Valero,
M., Leblanc, C. & Potin, P., 2011. Waterborne signaling primes the
expression of elicitor induced genes and buffers the oxidative responses in the
brown alga Laminaria digitata. PLOS One, 6, 6, 1-12.





2010





Barats A., Amouroux D., Pécheyran C., Chauvaud L., Thébault J., Donard O.F.X., 2010. Spring molybdenum enrichment in scallop shells: a potential tracer of diatom productivity in temperate coastal environments (Brittany, NW France). Biogeosciences 7(1): 233-245, [doi:10.5194/bg-7-233-2010]





Bellec, L., Grimsley,
N., Derelle, E., Moreau, H., Desdevises, Y., 2010. Abundance, spatial distribution and genetic diversity of Ostreococcus
tauri viruses in two different environments.
Environmental Microbiology Reports, 2(2), 313-321





Bonilla-Findji
O, Gattuso J-P, Pizay M-D, Weinbauer MG (2010) Autotrophic and heterotrophic
metabolism of microbial planktonic communities in an oligotrophic coastal
marine ecosystem: seasonal dynamics and episodic events. Biogeosciences 7:
3491-3503.























Cloern J.E., A.D. Jassby,
2010. Patterns and Scales of Phytoplankton Variability in Estuarine–Coastal
Ecosystems. Estuaries and Coasts, 33, 230–241. DOI 10.1007/s12237-009-9195-3







Conversi
A, Umani S-F, Peluso T, Molinero J-C, Santojanni A, Edwards M (2010) The
Mediterranean Sea Regime Shift at the End of the 1980s, and Intriguing
Parallelisms with Other European Basins. PLOS one, 5(5),e10633.





Goberville
E, Beaugrand G, Sautour B, Tréguer P, SOMLIT Team (2010) Climate-driven changes
in coastal marine systems of western Europe. Mar Ecol Prog Ser 408: 129-147.





Gómez,
F. and S. Souissi, 2010. The diatoms Odontella sinensis, Coscinodiscus
wailesii
and Thalassiosira punctigera in the european atlantic:
recent introductions or overlooked in the past? Fresenius Environmental
Bulletin, 19(8), 1424-1433.





Guillebault,
D., Laghdass, M., Catala, P., Obernosterer, I, Lebaron P (2010). Improved method for bacterial
cell capture after flow cytometry cell sorting. Applied and Environmental
Microbiology, Vol. 76 (21), 7352-7355.





Klein
C., Claquin P., Bouchart., Le Roy B., Véron B. (2010) Dynamics of Pseudo-nitzschia
spp. and domoic acid production in a macrotidal ecosystem of the Eastern
English Channel (Normandy – France). Harmful algae. 9: 218-226.





Laghdass,
M., West, N.J., Batailler, N., Caparros, J., Catala, P., Lanotine, F., Oriol,
L., Lebaron, P., Obernosterer, I (2010).
Impact of lower salinity waters on bacterial heterotrophic production
and community structure in the offshore NW Mediterranean Sea. Environmental Microbiology Reports,
Vol. 2 (6), 761-769.





Nicolas D., Lobry J., Lepage M.,
Sautour B., Le Pape O., Cabral H., Uriarte A., Boet P., 2010. Fish
under influence: A macroecological analysis of relations between fish species
richness and environmental gradients among European tidal estuaries. Estuarine,
Coastal and Shelf Science, 86, 137-147.





Obernosterer,
I., Lami, R., Larcher, M., Batailler, N., Catala, P., Lebaron, P (2010). Linkage between bacterial
carbon processing and the structure of the active bacterial community at a
coastal site in the NW Mediterranean Sea. Microbial Ecology, Vol 59 (3),
428-435.





Ory,
P., Hartmann, H.J., Jude, F., Dupuy, C., del Amo, Y., Catala, P., Mornet, F.,
Huet, V., Jan, B., Vincent, D., Sautour, B., Montanié, H. (2010). Pelagic food
web patterns: do they modulate virus and nanoflagellate effects on picoplankton
during the phytoplankton spring bloom? Environmental Microbiology 12(10),
2755–2772





Pasquaud,
S., David, V., Lobry, J., Girardin, M., Sautour, B. & Elie, P., 2010.
Exploitation of trophic resources by fish under stressful estuarine conditions.
Marine Ecology-Progress Series 400: 207-219.





Saari
K.H., Schmidt S., Castaing P., Blanc G., Sautour B., Masson O, Cochran J.K.,
2010. The particulate 7Be/210Pbxs and 234Th/210Pbxs activity ratios as tracers
for tidal-to-seasonal particle dynamics in the Gironde estuary (France):
implications for the budget of particle-associated contaminants. The Science of
the Total Environment, 408(20), 4784-94.





Sutherland
K R, Beet A R, Solow A R (2010) Re-analysis of a salp population time-series
Mar Ecol Prog Ser 418: 147-150.





2009





Barats
A., Amouroux D., Chauvaud L., Pécheyran C., Lorrain A., Thébault J., Church
T.M., Donard O.F.X., 2009. High frequency barium profiles in shells of the
Great Scallop Pecten maximus: a methodical long-term and multi-site survey in
Western Europe. Biogeosciences
6(2): 157-170, [doi:10.5194/bg-6-157-2009].





Clavier, J., M.D. Castets, T. Bastian, G. Boucher, C., Hily & L.
Chauvaud, 2009. An amphibious mode of life in the intertidal zone: contribution
of the barnacle Chthamalus montagui to CO2 fluxes. Marine Ecology
Progress Series, 375: 185-194.





Garrabou,
J., Coma, R., Bensoussan, N., Bally, M., Chevaldonné, P., Cigliano, M., Diaz,
D., Harmelin, J.G., Gambi, M.C., Kersting D. K., Lejeusne, C, Linares, C.,
Marschal, C., Pérez, T., Ribes, M., Romano, J.C., Serrano, E., Teixidó, N.,
Torrents, O., Zabala, M., Zuberer, F., Cerrano, C. (2009) Mass mortality in
northwestern Mediterranean rocky benthic communities : effects of the 2003 heat
wave. Global Change Biology 15:1090-1103.





Ghiglione,
J.F., Conan, P., Pujo-Pay, M (2009).
Diversity of total and active free-living vs. particle attached bacteria in the
euphotic zone of the NW Mediterranean Sea (2009). FEMS Microbiology Letters,
Vol. 299 (1), 9-21.





Lami R, Čuperova Z, Ras J, Lebaron P, Koblizek M (2009) Distribution of
free-living versus particle-attached aerobic anoxygenic phototrophic bacteria
in marine environments, Aquatic Microbial Ecology 55:31-38.





Lami R, Ghiglione JF, Desdevises Y, West N, Lebaron (2009) Annual
patterns of presence and activity of marine bacterial populations by 16S rDNA –
16S rRNA fingerprints in the coastal NW Mediterranean Sea. P Aquatic
Microbial Ecology 54:199-210.





Lamy,
D., Obernosterer, I., Laghdass, M., Artigas, L. F., Breton, E., Grattepanche,
J.-D., Lecuyer, E., Degros, N., Lebaron, P. and Christaki, U., 2009. Temporal
changes of major bacterial groups and bacterial heterotrophic activity during a
Phaeocystis globosa bloom in the eastern English Channel. Aquat. Microb. Ecol., 58, 95–107.





Laruelle G., Regnier P., Ragueneau
O., Kempa M., Moriceau B., Ni Longphuirt S., Leynaert A., Thouzeau G., Chauvaud
L., 2009. Benthic-pelagic coupling and the seasonal silica cycle
in the bay of Brest (France): New insights from a coupled physical-biological
model. Marine Ecology Progress series, 385: 15-32.





Le Moal M., Biegala I.C., 2009 Diazotrophic unicellular cyanobacteria in
the northwestern Mediterranean Sea: A seasonal cycle. Limnol. Oceanogr.,
54(3), 845–855.





Leynaert A., Ní Longphuirt S., Claquin P., Chauvaud
L., Ragueneau L., 2009. No
limit: the multiphasic uptake of silicic acid by benthic diatoms. Limnology
and Oceanography
, 54(2), 571-576.






Longphuirt S., Ragueneau O., Chauvaud L., Martin S., Jean F. , Thouzeau G., and
Leynaert A, 2009 Diurnal heterogeneity in silicic acid fluxes in shallow
coastal sites: causes and implications. Estuarine Coastal Shelf Science 82, p.
495-502.





Rodriquez-Blanco,
A., Ghiglione, J.F., Catala, P., Cassamayor, E.O., Lebaron, P (2009). Spatial
comparison of total vs. active bacterial populations by coupling genetic
fingerprinting and clone library analysises in the NW Mediterranean Sea. FEMS
Microbiology Ecology, Vol. 67 (1), 30-42





Tedetti M., Joux F., Charrière B., Mopper K., Sempéré S. (2009)
Contrasting effects of solar radiation and nitrates on the biovailability of
DOM to marine bacteria. Journal of Photochemistry and Photobiology A: Chemistry
201:243-247





Tunin-Ley
A., Ibanez F., Labat JP., Zingone A. & Lemée R. (2009) Phytoplankton
Biodiversity and Global Change in NW Mediterranean Sea: temporal changes in
dinoflagellates genus Ceratium over the last century. Marine Ecology
Progress Series.





2008





Foulon,
E., Not, F., Jalabert, F., Cariou, T., Massana, R. & Simon, N., 2008.
Ecological niche partitioning in the picoplanktonic green alga Micromonas
pusilla
: evidence from environmental surveys using phylogenetic probes. Environmental Microbiology
10:2433-2443.





Glé C., Del Amo Y. Sautour B.,
Laborde P., Chardy P. (2008). Variability of nutrients and phytoplanckton primary
production in a shallow macrotidal coastal ecosystem (Arcachon Bay, France). Estuarine
and Coastal Shelf Science
, 76: 642-656.





Golléty,
C., Gentil, F., Davoult, D., 2008. Secondary production, calcification and CO2
fluxes in the cirripeds Chthamalus montagui and Elminius modestus.
Oecologia 155: 133-142.





Golléty,
C., Migné, A., Davoult, D., 2008. Benthic metabolism on a sheltered rocky
shore: role of the canopy in the carbon budget. J. Phycol. 44: 1146-1153.





Gómez,
F. & Souissi, S. (2008) The impact of the 2003 summer heat wave and the
2005 late cold wave on the phytoplankton in the north-eastern English Channel. Comptes Rendus Biologies 331,
678-685.





Pannard, A., Claquin, P., Klein,
C., Le Roy, B., Véron, B., 2008. Short term variability of the
phytoplankton community in coastal ecosystem in response to physical and
chemical conditions changes. Estuarine Coastal Shelf Science 80, 212-224.





Rispoli,
V. F., Wilson, A. B., 2008. Sexual size dimorphism predicts the frequency of
multiple mating in the sex-role reversed pipefish Syngnathus typhle. J.
Evol. Biol. 21: 30-38.





Saari
H.-K., Schmidt S., Huguet S. & Lanoux A. (2008). Spatiotemporal variation
of dissolved238U in the Gironde fluvial-estuarine system (France). Journal
of Environmental Radioactivity,
99(2),
426-435





Seuront
L, Vincent D (2008) Increased seawater viscosity, Phaeocystis globosa spring
bloom and Temora longicornis feeding and swimming behaviours Marine
Ecology Progress Series, 131-145.





Vanhoutte-Brunier, A., Fernand, L.,
Ménesguen, A., Lyons, S., Gohin, F., Cugier, P., 2008. Modelling
the Karenia mikimotoi bloom that occurrin the western Englush Channel
during summer 2003. Ecol. Model., 210, 351-376.





2007





Agis
M., Granda A., Dolan J.R. (2007) A cautionary note: examples of possible
microbial community dynamics in dilution grazing experiments. Journal of
Experimental Marine Biology and Ecology, 341: 176-183.





David
V., Sautour B., Chardy P. (2007). Successful colonization of the calanoid
copepod Acartia tonsa in the oligo-mesohaline area of the Gironde
estuary (SW France) – Natural or anthropogenic forcing? Estuarine, Coastal
and Shelf Science
, 71: 429-442.





David
V., Sautour B., Chardy P. (2007). The paradox of the long-term decrease of the
clutch-size of the calanoid copepod Eurytemora affinis in a highly
turbid estuary (Gironde estuary, France) and the stability of species
abundances. Journal of Plankton Research, 333 : 202-218.





Duchemin M.B., Fournier M., Auffret M., 2007. Seasonal
variations of immune parameters in diploid and triploid Pacific oysters, Crassostrea
gigas
(Thunberg). Aquaculture
264: 73-81.





Etcheber H., Taillez A., Abril G.,
Garnier J., Servais P., Moatar F. and Commarieu M.V., 2007. Particulate
organic carbon in the Estuarine Turbidity Maxima of the Gironde, Loire and
Seine Estuaries: origin and lability. Hydrobiologia, 588, 245-259.





Fouillaron
P., Claquin P., L’Helguen S., Huonnic P., Martin-Jézéquel V., Masson A., Ni
Longphuirt S., Pondaven P., Thouzeau G., Leynaert A., 2007. Response
of a phytoplankton community to increased nutrient inputs: a mesocosm
experiment in the Bay of Brest (France). Journal of Experimental Marine Biology
and Ecology 351, p. 188-198.





Glé
C., Del Amo Y., Bec B., Sautour B., Froidefond J., Gohin F., Maurer D., Plus
M., Laborde P., Chardy P. (2007). Typology of environmental conditions at the
onset of winter phytoplankton blooms in a shallow macrotidal coastal ecosystem,
Arcachon Bay (France). Journal of Plankton Research, 29 (11), 999-1014.





Gómez
F & Souissi S (2007) The distribution and life cycle of the dinoflagellates
Spatulodinium pseudonoctiluca (Noctilucales, Dinophyceae) in the NE
English Channel. Comptes Rendus Biologies, 330:231-236.





Gómez
F & Souissi S (2007) Unusual diatoms linked to climatic events in the
northeastern English Channel. Journal of Sea Research, 58(4):283-290.





Guizien K., Charles F., Lantoine F., Naudin J.-J. (2007) Nearshore
dynamics of nutrients and chlorophyll during Mediterranean type flash-floods. Aquatic Liv. Res. 20(1): 3-14





Jouenne, F., Lefebvre, S., Veron,
B., Lagadeuc, Y., 2007. Phytoplankton community structure and primary
production in small intertidal estuarine-bay ecosystem (Eastern English
Channel, France). Marine Biology 151, 805-825.





Lacroix,
G., Ruddick, K., Gypens, N., Lancelot, C., 2007. Modelling the relative impact
of rivers (Scheldt/Rhine/Seine) and western Channel waters on nutrient and
diatom/Phaeocystis distributions in Belgian waters (Southern North Sea). Continental
Shelf Research 27 : 1422-1446.





Lacroix,
G., Ruddick, K., Park, Y., Gypens, N., Lancelot, C., 2007. Validation of the 3D
model MIRO&CO with field nutrient and phytoplankton data and MERIS-derived
surface chlorophyll a images. Journal of Marine Systems 64: 66-68.





Martin S., G. Thouzeau, M. Richard, L. Chauvaud, F. Jean & J.
Clavier, 2007. Benthic community metabolism in areas impacted by the invasive
species Crepidula fornicata L..
Marine Ecology Progress Series, 347: 51-60.





Martin
S., J. Clavier, Chauvaud, L. & G. Thouzeau, 2007. Community metabolism in
temperate maerl beds. I. Carbon and carbonate fluxes. Marine Ecology Progress
Series, 335: 19-29.





Moulin
F.Y., Guizien K., Thouzeau G., Chapalain G., Mülleners K., Bourg C., 2007. Impact
of an invasive species, Crepidula fornicata L., on the hydrodynamic and
transport properties of the benthic boundary layer. Aquatic
Living Resources 20 (1), p. 15-31





Moulin F.Y., Guizien K., Thouzeau G., Chapalain G., Mülleners K., Bourg
C., 2007. Impact of an invasive species, Crepidula fornicata L., on the
hydrodynamic and transport properties of the benthic boundary layer. Aquatic Living
Resources 20 (1), p. 15-31





Ni Longphuirt, S., J. Clavier, J.
Grall, L. Chauvaud, F. Le Loc’h, I. Le Berre, J. Flye Sainte-Marie, J. Richard
& A. Leynaert, 2007. Primary production and spatial distribution of
subtidal microphytobenthos in a temperate coastal system, the Bay of Brest,
France. Estuarine Coastal and Shelf Science, 74 (3): 367-380.





Not,
F., Valentin, K., Romari, K., Lovejoy, C., Massana, R., Töbe, K., Vaulot, D.
& Medlin, L. 2007. Picobiliphytes, a new marine picoplanktonic algal group
with unknown affinities to other eukaryotes. Science, 315:252-254.





Riso R.R., Pernet-Coudrier B.,
Waeles, M. & Le Corre, P., 2007. Dissolved iron analysis in
estuarine and coastal waters by using a modified adsorptive stripping
chronoipotentiometric (SCP) method . Analytica Chimica Acta 598: 235 – 241.





Thierry,
V., Gaillard, F., Reverdin, G., Morin, P., Vandermeirsch, F., Degros, N., 2007.
French National Report. In: Report of the Working Group on Oceanic
Hydrography. International Council for the Exploration of the Sea, 66-82
.





Tunin-Ley
A., Labat J.P., Gasparini S., Mousseau L., Lemée R. (2007) Annual cycle and
subspecific diversity of the genus Ceratium (dinoflagellates) in the
Ligurian Sea, NW Mediterranean. Journal of Phycology, 43 : 1149-1163





2006





David
V., Chardy P., Sautour B. (2006). Fitting Predator-Prey model to zooplancton
time-series in the Gironde estuary (France): Ecological significance of the
parameters. Estuarine, Coastal and Shelf Science 67, 605-617.





David
V., Sautour B., Galois R., Chardy P. (2006). The paradox high zooplanktonic
biomasses – low vegetal particulate organic matter in a high turbidity zone:
what way for energy transfers? Journal of Experimental Marine Biology and
Ecology,
333: 202-218.





Dolan
J.R., Lemée R., Gasparini S., Mousseau L. , Heyndrickx C. (2006) Probing
diversity in the plankton: using patterns in Tintinnids (planktonic marine
ciliates) to identify mechanisms. Hydrobiology. 555: 143–157.





Dupont L., Richard J., Paulet Y.-M., Thouzeau G., Viard F., 2006. Gregariousness
and protandry promote reproductive insurance in the invasive gastropod Crepidula fornicata: evidence from
assignment of larval paternity. Molecular Ecology, 15, p. 3009-3021.





Licandro
P., Ibanez F., Etienne M. (2006) Long-term fluctuations (1974-1999) of the
salps Thalia democratica and Salpa fusiformis in the northwestern
Mediterranean Sea : Relationships with hydroclimatic variability. Limnology Oceanography, 51 :
1832-1848





Martin
S., Thouzeau G., Chauvaud L., Jean F., Guerin L., Clavier J., 2006. Respiration,
calcification, and excretion of the invasive slipper limpet, Crepidula
fornicata
L.: Implications for carbon, carbonate, and nitrogen fluxes in
affected areas. Limnology And Oceanography 51: 1996-2007.





Ménesguen
A., Cugier P., Leblond I., 2006. A new numerical technique for
tracking chemical species in a multi-source, coastal ecosystem, applied to
nitrogen causing Ulva blooms in the Bay of Brest  (France). Limnol. Oceanogr.,
51 : 591-601.





Groisillier, A., Massana, R.,
Valentin, K., Vaulot, D. & Guillou, L. 2006. Genetic
diversity and habitats of two enigmatic marine alveolate lineages. Aquat. Microb. Ecol. 42:277-91.





Jacquin
A.G., Donval A., Guillou J., Leyzour S., Deslandes E., Guillou M., 2006. The
reproductive response of the sea urchins Paracentrotus lividus (G.) and Psammechinus
miliaris
(L.) to a hyperproteinated macrophytic diet. Journal of
Experimental Marine Biology And Ecology 339: 43-54.





Martin
S., M.D. Castets & J. Clavier, 2006. Primary production, respiration and
calcification of the free-living coralline alga Lithothamnion corallioides, in Western Brittany. Aquatic Botany, 85 (2): 121-128.





Plouguerné, E., Le Lann, K.,
Connan, S., Jechoux, G., Deslandes, E., Stiger-Pouvreau V. 2006. Spatial
and seasonal variation in density, reproductive status, length and phenolic
content of the invasive brown macroalga Sargassum
muticum
(Yendo) Fensholt along the coast of Western Brittany (France). Aquatic
Botany 85 : 337-344
.





Poulet,
S.A., Wichard, T., Ledoux, J.B., Lebreton, B., Marchetti, J., Dancie, C.,
Bonnet, D., Cueff, A., Pohnert, G., & Morin, P., 2006. The paradoxical
influence of diatoms on copepod reproduction. I. New field and laboratory
observations related to the Calanus helgolandicus egg production- Marine
Ecology Progress Series, 308: 129-142.





Richard J., Huet M., Thouzeau G., Paulet Y.M., 2006. Reproduction
of the invasive slipper limpet, Crepidula fornicata, in the Bay of
Brest, France, Marine Biology 149: 789-801.





Riso, R.D., Waeles, M.,
Pernet-Coudrier, B., Le Corre, P., 2006. Determination
of dissolved iron(III) in estuarine and coastal waters by adsorptive stripping
chronopotentiometry (SCP). Analytical and Bioanalytical Chemistry, 385:
76-82.





Seuront
L, Vincent D & Mitchell JG (2006) Biologically-induced modification of
seawater viscosity in the Eastern English Channel during a Phaeocystis globosa
spring bloom. Journal of Marine Systems, 61, 118-133.





Shalchian-Tabrizi,
K., Eikrem, W., Klaveness, D., Vaulot, D., Le Gall, F., Romari, K., Throndsen,
J., Massana, R., Thomsen, H. A. & Jakobsen, K. S. 2006. Telonemia, a
new protist phylum with affinity to chromist lineages. Proc. R. Soc. Lond.
B. Biol. Sci.
253:1833–42.





Wienbauer
M.G., Christen R., Höfle M.G., (2006) The response of Vibrio- and
Rhodobacter-related populations in the NW Mediterranean Sea to additions of
dissolved organic matter, phages and dilution. Microbial Ecology, 51 : 336-344.





2005





Bader,
B., Schäfer, P., 2005. Impact of environmental seasonality on stable isotope
compostion of skeletons of temperate bryozoan Cellaria sinuosa. Palaeogeography,
Palaeoclimatology, Palaeoecology, 226, 58- 71.





Charles
F., Lopez-Legentil S., Grémare A., Amouroux J.M., Desmalades M., Vetion G.,
Escoubeyrou K. (2005). Does sediment resuspension by storms affect the fate of
polychlorobiphenyls (PCBs) in benthic food chain ? Interactions between changes
in POM characteristics, adsorption and absorption by the mussel Mytilus galloprovincialis. Continental
Shelf Research, 25(19-20), 2533-2553.





David
V., Sautour B., Chardy P., Leconte M. (2005). Long term changes of the
zooplanktonic variability in a turbid estuary : Gironde estuary (France). Estuarine
Coastal and Shelf Science,
64: 171-184.





Devreker
D, Souissi S & Seuront L (2005) Effects of chlorophyll concentration and
temperature variations on the reproduction and survival of Temora
longicornis
(Copepoda, Calanoida) in the Eastern English Channel. Journal
of Experimental Marine Biology and Ecology
, 318: 145-162.





Dolan
J.R., McKeon K. (2005) The reliabilty of grazing rate estimates from dilution
experiments: Have we over-estimated rates of organic carbon consumption by
microzooplankton? Ocean Science 1: 1-7





Ferre B., Guizien K., Durrieu de Madron X., Palanques A., Guillen J., Grémare
A. (2005) Fine-grained sediment dynamics during a strong storm event in the
inner-shelf of the Gulf of Lion (NW Mediterranean). Continental Shelf Research,
25(19-20), 2410-2427.





Ghiglione J.F, Larcher M., Lebaron P. (2005). Field study of the
chemical characterization of the upper ocean surface using various samplers.
Limnol. Oceanogr. Methods. 2:374-386.





Ghiglione
J.F, Larcher M., Lebaron P. (2005). Spatial and temporal scales for the
monitoring of bacterioplankton community structure in NW Mediterranean Sea. Aquat. Microb. Ecol., 40(3), 229-240.





Jouenne, F,. Lefebvre, S., Véron,
B., Lagadeuc, Y., 2005. Biological and physicochemical factors controlling
short-term variability in phytoplankton primary production and photosynthetic
parameters in a macrotidal ecosystem (eastern English Channel). Estuarine
Coastal Shelf Science 65, 421-439.





L’Helguen,
S., Slawyk, G., Le Corre,P., 2005. Seasonal patterns of urea regeneration by
size-fractionned microheterotrophs in well-mixed temperate coastal waters. Journal
of Plankton Research
, 27: 263-270.





Martin, S., J. Clavier, G. Thouzeau, L. Chauvaud, J.-M. Guarini, C.
Hily, F. Jean, J. Grall & J. Richard, 2005. Community metabolism comparison
between Zostera marina meadows and maërl beds in the Bay of Brest (France).
Aquatic Botany, 83 (3): 161-174.





Molinero
J-C., Ibanez F., Nival P., Buecher I., Souissi S. (2005) North Atlantic climate
and northwestern Mediterranean plankton variability. Limnology and
Oceanography, 50 (4) : 1213-1220





Molinero
J-C., Ibanez F., Souissi S., Chifflet M., Nival P. (2005) Phenological changes
in the Northwestern Mediterranean copépodes Centropages typicus and Temora
stylifera
linked to climate forcing. Oecologia 145 : 640-649





Obernosterer I., Catala P., Reinthaler G. J., Herndl C., Lebaron P.,
(2005) Enhanced heterotrophic activity in the sea-surface microlayer of the
Mediterranean Sea. Aquat. Microb. Ecol. Vol. 39:293–302





Ragueneau O., Chauvaud
L., Moriceau B., Leynaert A., Thouzeau G., Donval A., Le Loch F., Jean F.,
2005. Biodeposition by an invasive suspension
feeder impacts the biogeochemical cycle of Si in a coastal ecosystem (Bay of
Brest). Biogeochemistry 75: 19-41.





Ragueneau O., Savoye N., Tardiveau B., Leynaert A., Del Amo Y., Cotten
J., 2005. A new method for the measurement of biogenic silica in suspended
matter of coastal waters: Using Si:Al ratios to correct for the mineral
interference. Continental Shelf Research 25: 697-710.





Zhu,
F., Not, F., Massana, R., Marie, D. & Vaulot, D. 2005. Mapping of the
picoeucaryotes in marine with quantitative PCR of the 18S rRNA gene. FEMS Microbiol. Ecol. 52; 79-92.





2004





Abril, G., M. Commarieu, D. Maro,
M. Fontugne, F. Guérin, and H. Etcheber (2004). A massive
dissolved inorganic carbon release at spring tide in a highly turbid estuary,
Geophys. Res. Lett., 31, L09316, doi:10.1029/2004GL019714.





Agogué
H., Joux F., Obernosterer I., Dupuy C., Lantoine F., Catala P., Herndl G., Lebaron
P. (2004). Comparison of samplers for the biological characterization of the
air-seawater interface. Limnol.
Oceanogr. Methods 2:213-225.





Bensoussan, N., Romano,
J.-C., El-Haikali, B., Lafont, M.-G.. 2004 Importance du choix des échelles de
temps pertinentes pour l’étude du fonctionnement d’écosystèmes marins
littoraux. C. R. Acad. Sci. Geoscience Series.,
336(10), 909-918.





Beucher
C., Tréguer P., Corvaisier R., Hapette A.M., Elskens M., 2004 -Production and
dissolution of biosilica and changing of microphytoplankton dominance in the
Bay of Brest (France). Marine Ecology Progress Series, 267: 57-69.





Blain
S., Guillou J., Tréguer P., Woerther P., Delauney L.., Follenfant E., Gontier
O., Hamon M., Leildé B., Masson A., Tartu C., Vuillemin R., 2004. High
frequency monitoring of the coastal marine environment using the MAREL buoy.
Journal of environmental monitoring, 6: 569-575.





Desroy
N. & Denis L. 2004. Influence of spring phytodetritus sedimentation on the
spatio-temporal variability of intertidal macrozoobenthos in the Eastern
English Channel. Marine
Ecology Progress Series 270 : 41-53.





Froidefond J.M., Doxaran D. (2004).
Télédétection optique appliquée à l’étude des eaux côtières. Télédetection,
4 (2), 579-596.





Froidefond
J.M., Lahet F., Hu C., Doxaran D., Guiral D., Prost M.T., Ternon J.F. (2004).
Mudflats and mud suspension observed from satellite data in French Guiana,
Marine Geology, 208, 153-168.





Grosjean
P., Picheral P., Warembourg C. and Gorsky G. (2004) Enumeration, measurement
and identification of net zooplankton samples using the ZOOSCAN digital imaging
system. ICES Journal of Marine Science, Vol. 61, No 4, 1-8.





Guillou,
L., Eikrem, W., Chrétiennot-Dinet, M. J., Le Gall, F., Massana, R., Romari, K.,
Pedrós-Alió, C. & Vaulot, D., 2004. Diversity of picoplanktonic
prasinophytes assessed by direct nuclear SSU rDNA sequencing of environmental
samples and novel isolates retrieved from oceanic and coastal marine
ecosystems. Protist 155:193-214.





Heilmayer,
O., Brey, T., Storch, D., Mackensen, A. & Arntz., W.E., 2004. Population
dynamics and metabolism of Aequipecten opercularis (L.) from the Western
English Channel (Roscoff, France). J.
Sea Res., 52, 33-44.





Massana, R., Castresana, J.,
Balagué, V., Guillou, L., Romari, K., Groisillier, A., Valentin, K. &
Pedrós-Alió, C., 2004. Phylogenetic and ecological analysis of novel marine
stramenopiles. Appl. Environ. Microbiol. 70:3528–34.





Momzikoff
A., Brinis A., Dallot S., Gondry G., Saliot A. Lebaron P. 2004. Field study of
the chemical characterization of the upper ocean surface using various
samplers. Limnol. Oceanogr. Methods. 2:374-386.





Not,
F., Latasa, M., Marie, D., Cariou, T., Vaulot, D. & Simon, N. 2004. A
single species Micromonas pusilla (Prasinophyceae) dominates the eukaryotic
picoplankton in the Western English Channel. Appl. Environ. Microbiol. 70:4064-72.





Robert S., Blanc G., Schafer J.,
Lavaux G., Abril G. (2004). Metal mobilization in the fluid mud of the Gironde
estuary (France) in low discharge regime, Marine Chemistry, 87, 1-13.





Romari,
K. & Vaulot, D., 2004. Composition and temporal variability of
picoeukaryote communities at a coastal site of the English Channel from 18S
rDNA sequences. Limnol. Oceanogr. 49:784-98.





Tanaka,
T., F. Rassoulzadegan and T. F. Thingstad, 2004. Orthophosphate uptake by
heterotrophic bacteria, cyanobacteria, and autotrophic nanoflagellates in
Villefranche Bay, northwestern Mediterranean: Vertical, seasonal, and short-term
variations of the competitive relationship for phosphorus. Limnol. Oceanogr., 49(4), 2004,
1063–1072.





2003





Beauvais S,  Pedrotti M.L., Villa E. &. Lemée R.
(2003). Transparent exopolymer particle (TEP) dynamics in
relation to trophic and hydrological conditions in the NW Mediterranean Sea. Marine
Ecology Progress Series, 262 :97-109.





Biegala,
I., Not, F., Vaulot, D. & Simon, N., 2003. Quantitative assessment of
picoeucaryotes in the natural environment using taxon specific oligonucleotide
probes in association with TSA-FISH (Tyramide Signal Amplification –
Fluorescent In Situ Hybridization) and flow cytometry. Appl. Environ. Microbiol.,
69:5519-29.





Charles F., Jordana E., Amouroux
J.M., Grémare A., Desmalades M., Zudaire L., 2003. Reproduction,
recruitment and larval metamorphosis in the serpulid polychaete ditrupa
arietina (O.F. Müller). Estuar. Coast. Shelf Sci. 57, 435-443





Doxaran
D., Froidefond J.M., Castaing P. (2003). A reflectance band ratio used to
estimate suspended matter concentrations in sediment-dominated coastal waters.
International Journal of Remote Sensing, 23, 5079-5085.





Doxaran
D., Froidefond J.M., Castaing P. (2003). Remote sensing reflectance of turbid
sediment-dominated waters. Reduction of sediment type variations and changing
illumination conditions effects using reflectance ratios, Applied Optics, 42,
2623-2634.





Gómez,
F., and G. Gorsky (2003). Annual microplankton cycles in Villefranche Bay,
Ligurian Sea, and NW Mediterranean. J.
Plankton Res. 25: 323-339 





Grémare A., Amouroux J. M., Cauwet
G., Charles F., Courties C., Debovée F., Dinet A., Devenon J. L., Durieu de
Madron X., Fraunie P., Joux F., Lantoine F., Lebaron P., Naudin J.J., Palanques
A., Pujo-Pay M., Zudaire L. (2003). Response of Mediterranean
coastal ecosystems to brief meteorological events. Preliminary results on the
impact of a major winter storm. Oceanologica Acta 26, 407-419.





Tanaka,
T., F. Rassoulzadegan and T. F. Thingstad. (2003). Measurements of phosphate
affinity constants and phosphorus release rates from the microbial food web in
Villefranche Bay, northwestern Mediterranean. Limonol. Oceanogr., 48:(3)





Younes W., Bensoussan N., Romano
J.-C., Arlhac D.,Lafont M. 2003. Variations saisonnières et inter-annuelles
(1996-2000) des eaux côtières à l’est de l’embouchure du Rhône suivies par la
série SORCOM.  Oceanol.
Acta., 26: 311-321





2002





Abril
G., Iversen N. (2002). Methane dynamics in a shallow, non-tidal, estuary
(Randers Fjord, Denmark), Marine Ecology, Progress Series, 230, 171-181.





Abril G., Nogueira M., Etcheber H.,
Cabeçadas G., Lemaire E., Brogueira M.J. (2002). Behaviour
of organic carbon in nine contrasting European estuaries, Est Coastal Shelf
Science, 54, 241-262.





Burdloff D., Gasparini S., Villate
F., Uriarte I., Cotano U., Sautour B., Etcheber H. (2002). Egg
production of the copepod Acartia bifilosa in two contrasting European
estuaries in relation to seston composition, Journal of Experimental Marine
Biology and Ecology, 274, janv-17.





Butel R., Dupuis H., Bonneton P.
(2002). Spatial variability of wave conditions at French
Atlantic coast using in-situ data, Journal of Coastal Research, SI 36, 96-108.





Ragueneau O., Chauvaud L.,
Leynaert, A., Thouzeau G., Paulet Y.-M., Bonnet S., Lorrain A., Corvaisier R.,
Le Hir M., Jean F., Clavier J., 2002. Direct evidence of a
biologically active coastal silicate pump: ecological implications. Limnology
and Oceanography, 47 : 1849-1854.





Vaulot,
D., Romari, K. & Not, F. 2002. Are autotrophs less diverse than
heterotrophs in marine picoplankton? Trends Microbiol. 10:266-7.





2001





Medernach
L., Grémare A., Amouroux J.M., Colomines J.C., Vetion G, 2001. Temporal changes
in the amino acid contents of particulate organic matter sedimenting in the Bay
of Banyuls-sur-Mer (North-western Mediterranean). Marine Ecology Progress Series,
214, 55-65.





2000





Breton E., Brunet C., Sautour B.,
Brylinski JM, 2000. Annual variations of phytoplankton in the Eastern
English Channel: comparison by pigment signatures and microscopic counts. Journal
of Plankton Research, 22(8), 1423-1440.





Burdloff
D., Gasparini S., Sautour B., Etcheber H., Castel J., 2000. Is the copepod egg
production in a highly turbid estuary (the Gironde, France) a function of the
biochemical composition of seston? Aquatic Ecology, 34: 165-175.





Ferrier
C., Gattuso J.P., J. Jaubert et S. Dallot, 2000. Effect of nutrient enrichment
on photosynthesis and calcification of the zooxanthellate coral Stylophora pistillata. Coral Reef 19 : 103-113.





Lorrain A., Paulet Y-M., Chauvaud
L., Savoye N., Nézan E. & Guérin L., 2000. Growth
anomalies in Pecten maximus from coastal waters (Bay of Brest, France):
relationships with diatoms blooms. J.
Mar. Biol. Ass. UK, 80, 667-673.





Romano J-C., N.Bensoussan, W.
Younes, D.Arlhac (2000) Anomalies thermiques dans les eaux du golfe de
Marseille durant l’été. Une explication partielle de la mortalité d’invertébrés
fixés. C.R. Acad. Sci Paris. 232, p 415-427.





Sottolichio
A., Le Hir P., & Castaing P., 2000. Modelling mechanisms for the turbidity
maximum stability in the Gironde estuary. In: A.J. Mehta, W. McAnally (Eds).
Coastal and Estuarine Fine Sediment Transport, Processes and Application. Proceedings
in Marine Science 3(C), 373-386.





1999





Beker,
B., Romano, J.-C., Arlhac, D., 1999. Long-term series, a tool for monitoring
the variability of phytoplanktonic populations in the marine littoral
environment: The Gulf of Marseilles in 1996-1997. [Le suivi de la variabilité des
peuplements phytoplanctoniques en milieu marin littoral: le golfe de Marseille
en 1996-1997]. Oceanis, 25(3), pp. 395-415.





Buecher,
E., 1999. Appearance of Chelophyes appendiculata and Abylopsis tetragona
(Cnidaria, Siphonophora) in the Bay of Villefranche, northwestern
Mediterranean. J. Sea res. 41: 295-307.





Cariou
J. B., J. Dolan & S. Dallot, 1999. A preliminary study of tintinnid
diversity in the NW Mediterranean Sea. J. plank. res. 21 (6):1065-1075.





Castaing
P., J.M. Froidefond, P. Lazure. O.
Weber, R. Prud’homme, J.M. Jouanneau, 1999. Relationship
between hydrology and seasonal distribution of suspended matter on the
continental margin of the Bay of Biscay. Deep Sea Res. II, 46(10), 1979-2002.





Gasparini
S., Castel J., and Irigoyen X., 1999. Impact of suspended particulate matter on
egg production of the estuarine copepod Eurytemora
affinis
. Journal of Marine System, 22(2-3), pp. 195-205.





Sottolichio
A., Castaing P., 1999. A synthesis on seasonal dynamics of highly concentrated
structures in the Gironde estuary. C.R. Acad. Sci. Paris, Sci. Vie, 329, n° 11:
795-800.





Stemmann,
L., Picheral, M. and G. Gorsky, 1999. Diel changes in the vertical distribution
of suspended particulate matter in the NW Mediterranean Sea investigated with
the Underwater Video Profiler. Deep-Sea Research Part I: Oceanographic Research
Papers, 47(3), 505-531.





1998





Grémare
A., Amouroux J.M., Charles F., Nozais C., Baudart J., Medernach L., Jordana E.,
Vetion G., Colomines J.C., 1998. Temporal changes in the biochemical
composition of particulate organic matter sedimenting in the coastal zone. A
case study at a permanent site in the Bay of Banyuls-sur-Mer (Western
Mediterranean). Oceanol.
Acta, 21 :783-792.





1997





Grémare A., Amouroux J.M., Charles
F., Dinet A., Riaux-Gobin C., Baudart J., Medernach L., Bodiou J.Y., Vetion G.,
Colomines J.C., Albert P., 1997. Temporal changes in the
biochemical composition and nutritional value of the particulate organic matter
available to surface deposit feeders: a two-years study. Mar. Ecol. Progr. Ser., 150
:195-206.